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Gene : AT3G03980 A. thaliana

Gene ID  ? AT3G03980
Brief Description  NAD(P)-binding Rossmann-fold superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G04000.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G03980 0.5kb upstream 0.5kb upstream 2078   true Chr3: 1031160-1033237
AT3G03980 0.5kb upstream 0.5kb upstream 500   false Chr3: 1031160-1031659
AT3G03980 0.5kb downstream 0.5kb downstream 2078   true Chr3: 1031660-1033737
AT3G03980 0.5kb downstream 0.5kb downstream 500   false Chr3: 1033238-1033737
AT3G03980 1.0kb upstream 1.0kb upstream 2578   true Chr3: 1030660-1033237
AT3G03980 1.0kb upstream 1.0kb upstream 1000   false Chr3: 1030660-1031659
AT3G03980 1.0kb downstream 1.0kb downstream 2578   true Chr3: 1031660-1034237
AT3G03980 1.0kb downstream 1.0kb downstream 1000   false Chr3: 1033238-1034237
AT3G03980 3.0kb upstream 3.0kb upstream 4578   true Chr3: 1028660-1033237
AT3G03980 3.0kb upstream 3.0kb upstream 3000   false Chr3: 1028660-1031659
AT3G03980 3.0kb downstream 3.0kb downstream 4578   true Chr3: 1031660-1036237
AT3G03980 3.0kb downstream 3.0kb downstream 3000   false Chr3: 1033238-1036237

Proteins

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5 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01040 Biosynthesis of unsaturated fatty acids
01212 Fatty acid metabolism
00061 Fatty acid biosynthesis
00780 Biotin metabolism

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139