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Gene : AT3G04590 A. thaliana

Gene ID  ? AT3G04590
Brief Description  AT hook motif DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G33620.4).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • AT-hook motif nuclear localized protein 14,
  • AHL14

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G04590 0.5kb upstream 0.5kb upstream 3452   true Chr3: 1238853-1242304
AT3G04590 0.5kb upstream 0.5kb upstream 500   false Chr3: 1241805-1242304
AT3G04590 0.5kb downstream 0.5kb downstream 3452   true Chr3: 1238353-1241804
AT3G04590 0.5kb downstream 0.5kb downstream 500   false Chr3: 1238353-1238852
AT3G04590 1.0kb upstream 1.0kb upstream 3952   true Chr3: 1238853-1242804
AT3G04590 1.0kb upstream 1.0kb upstream 1000   false Chr3: 1241805-1242804
AT3G04590 1.0kb downstream 1.0kb downstream 3952   true Chr3: 1237853-1241804
AT3G04590 1.0kb downstream 1.0kb downstream 1000   false Chr3: 1237853-1238852
AT3G04590 3.0kb upstream 3.0kb upstream 5952   true Chr3: 1238853-1244804
AT3G04590 3.0kb upstream 3.0kb upstream 3000   false Chr3: 1241805-1244804
AT3G04590 3.0kb downstream 3.0kb downstream 5952   true Chr3: 1235853-1241804
AT3G04590 3.0kb downstream 3.0kb downstream 3000   false Chr3: 1235853-1238852

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0