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Gene : Cand2 A. thaliana

Gene ID  ? AT3G05010
Brief Description  Protein of unknown function, transmembrane-40  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT5G27210.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a candidate G-protein Coupled Receptor that is involved in the regulation of root growth by bacterial N-acyl-homoserine lactones (AHLs) and plays a role in mediating interactions between plants and microbes.  Source: TAIR, Jun 30, 2015.
Name  ? candidate G-protein Coupled Receptor 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
These results suggest that Cand2 and Cand7 are involved in the regulation of root growth by bacterial N-acyl-homoserine lactones and that GPCRs play a role in mediating interactions between plants and microbes.[Cand2] 22206669

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G05010 0.5kb upstream 0.5kb upstream 2805   true Chr3: 1388871-1391675
AT3G05010 0.5kb upstream 0.5kb upstream 500   false Chr3: 1388871-1389370
AT3G05010 0.5kb downstream 0.5kb downstream 2805   true Chr3: 1389371-1392175
AT3G05010 0.5kb downstream 0.5kb downstream 500   false Chr3: 1391676-1392175
AT3G05010 1.0kb upstream 1.0kb upstream 3305   true Chr3: 1388371-1391675
AT3G05010 1.0kb upstream 1.0kb upstream 1000   false Chr3: 1388371-1389370
AT3G05010 1.0kb downstream 1.0kb downstream 3305   true Chr3: 1389371-1392675
AT3G05010 1.0kb downstream 1.0kb downstream 1000   false Chr3: 1391676-1392675
AT3G05010 3.0kb upstream 3.0kb upstream 5305   true Chr3: 1386371-1391675
AT3G05010 3.0kb upstream 3.0kb upstream 3000   false Chr3: 1386371-1389370
AT3G05010 3.0kb downstream 3.0kb downstream 5305   true Chr3: 1389371-1394675
AT3G05010 3.0kb downstream 3.0kb downstream 3000   false Chr3: 1391676-1394675

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016