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Gene : MEF19 A. thaliana

Gene ID  ? AT3G05240
Brief Description  mitochondrial editing factor 19  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mitochondrial editing factor 19 (MEF19); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 19

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G05240 0.5kb upstream 0.5kb upstream 2198   true Chr3: 1493684-1495881
AT3G05240 0.5kb upstream 0.5kb upstream 500   false Chr3: 1495382-1495881
AT3G05240 0.5kb downstream 0.5kb downstream 2198   true Chr3: 1493184-1495381
AT3G05240 0.5kb downstream 0.5kb downstream 500   false Chr3: 1493184-1493683
AT3G05240 1.0kb upstream 1.0kb upstream 2698   true Chr3: 1493684-1496381
AT3G05240 1.0kb upstream 1.0kb upstream 1000   false Chr3: 1495382-1496381
AT3G05240 1.0kb downstream 1.0kb downstream 2698   true Chr3: 1492684-1495381
AT3G05240 1.0kb downstream 1.0kb downstream 1000   false Chr3: 1492684-1493683
AT3G05240 3.0kb upstream 3.0kb upstream 4698   true Chr3: 1493684-1498381
AT3G05240 3.0kb upstream 3.0kb upstream 3000   false Chr3: 1495382-1498381
AT3G05240 3.0kb downstream 3.0kb downstream 4698   true Chr3: 1490684-1495381
AT3G05240 3.0kb downstream 3.0kb downstream 3000   false Chr3: 1490684-1493683

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139