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Gene : SCN1 A. thaliana

Gene ID  ? AT3G07880
Brief Description  Immunoglobulin E-set superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
SCN1 is a RhoGTPase GDP dissociation inhibitor (AtRhoGDI1) that spatially restricts the sites of growth to a single point on the trichoblast [SCN1] 16355224


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G07880 0.5kb upstream 0.5kb upstream 2559   true Chr3: 2513425-2515983
AT3G07880 0.5kb upstream 0.5kb upstream 500   false Chr3: 2513425-2513924
AT3G07880 0.5kb downstream 0.5kb downstream 2559   true Chr3: 2513925-2516483
AT3G07880 0.5kb downstream 0.5kb downstream 500   false Chr3: 2515984-2516483
AT3G07880 1.0kb upstream 1.0kb upstream 3059   true Chr3: 2512925-2515983
AT3G07880 1.0kb upstream 1.0kb upstream 1000   false Chr3: 2512925-2513924
AT3G07880 1.0kb downstream 1.0kb downstream 3059   true Chr3: 2513925-2516983
AT3G07880 1.0kb downstream 1.0kb downstream 1000   false Chr3: 2515984-2516983
AT3G07880 3.0kb upstream 3.0kb upstream 5059   true Chr3: 2510925-2515983
AT3G07880 3.0kb upstream 3.0kb upstream 3000   false Chr3: 2510925-2513924
AT3G07880 3.0kb downstream 3.0kb downstream 5059   true Chr3: 2513925-2518983
AT3G07880 3.0kb downstream 3.0kb downstream 3000   false Chr3: 2515984-2518983


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139