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Gene : S6K2 A. thaliana

Gene ID  ? AT3G08720
Brief Description  serine/threonine protein kinase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? serine/threonine protein kinase 2 (S6K2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein-serine kinase 1 (TAIR:AT3G08730.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.  Source: TAIR, Jun 30, 2015.
Name  ? serine/threonine protein kinase 2
  • synonyms:
  • ATPK19,
  • ARABIDOPSIS THALIANA PROTEIN KINASE 2,
  • ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2,
  • Arabidopsis thaliana protein kinase 19,
  • ATS6K2,
  • ATPK2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G08720 0.5kb upstream 0.5kb upstream 3360   true Chr3: 2648372-2651731
AT3G08720 0.5kb upstream 0.5kb upstream 500   false Chr3: 2651232-2651731
AT3G08720 0.5kb downstream 0.5kb downstream 3360   true Chr3: 2647872-2651231
AT3G08720 0.5kb downstream 0.5kb downstream 500   false Chr3: 2647872-2648371
AT3G08720 1.0kb upstream 1.0kb upstream 3860   true Chr3: 2648372-2652231
AT3G08720 1.0kb upstream 1.0kb upstream 1000   false Chr3: 2651232-2652231
AT3G08720 1.0kb downstream 1.0kb downstream 3860   true Chr3: 2647372-2651231
AT3G08720 1.0kb downstream 1.0kb downstream 1000   false Chr3: 2647372-2648371
AT3G08720 3.0kb upstream 3.0kb upstream 5860   true Chr3: 2648372-2654231
AT3G08720 3.0kb upstream 3.0kb upstream 3000   false Chr3: 2651232-2654231
AT3G08720 3.0kb downstream 3.0kb downstream 5860   true Chr3: 2645372-2651231
AT3G08720 3.0kb downstream 3.0kb downstream 3000   false Chr3: 2645372-2648371

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1 Pathways

Data Source: KEGG

Identifier Name
04931 Insulin resistance

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139