help  | faq  | software  | ARAPORT

Gene : PYK10 A. thaliana

Gene ID  ? AT3G09260
Brief Description  Glycosyl hydrolase superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? PYK10; FUNCTIONS IN: beta-glucosidase activity, copper ion binding, hydrolase activity, hydrolyzing O-glycosyl compounds, fucosidase activity; INVOLVED IN: ER body organization, response to salt stress, response to symbiotic fungus, cellular response to cold, response to osmotic stress; LOCATED IN: peroxisome, nucleus, vacuole, membrane, ER body; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G66280.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G09260 0.5kb upstream 0.5kb upstream 3805   true Chr3: 2840477-2844281
AT3G09260 0.5kb upstream 0.5kb upstream 500   false Chr3: 2843782-2844281
AT3G09260 0.5kb downstream 0.5kb downstream 3805   true Chr3: 2839977-2843781
AT3G09260 0.5kb downstream 0.5kb downstream 500   false Chr3: 2839977-2840476
AT3G09260 1.0kb upstream 1.0kb upstream 4305   true Chr3: 2840477-2844781
AT3G09260 1.0kb upstream 1.0kb upstream 1000   false Chr3: 2843782-2844781
AT3G09260 1.0kb downstream 1.0kb downstream 4305   true Chr3: 2839477-2843781
AT3G09260 1.0kb downstream 1.0kb downstream 1000   false Chr3: 2839477-2840476
AT3G09260 3.0kb upstream 3.0kb upstream 6305   true Chr3: 2840477-2846781
AT3G09260 3.0kb upstream 3.0kb upstream 3000   false Chr3: 2843782-2846781
AT3G09260 3.0kb downstream 3.0kb downstream 6305   true Chr3: 2837477-2843781
AT3G09260 3.0kb downstream 3.0kb downstream 3000   false Chr3: 2837477-2840476

Proteins

Protein Displayer


Function

Gene Ontology Displayer

5 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00500 Starch and sucrose metabolism
00940 Phenylpropanoid biosynthesis
00460 Cyanoamino acid metabolism

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139