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Gene : PIP5K9 A. thaliana

Gene ID  ? AT3G09920
Brief Description  phosphatidyl inositol monophosphate 5 kinase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? phosphatidyl inositol monophosphate 5 kinase (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1).  Source: TAIR, Jun 30, 2015.
Name  ? phosphatidyl inositol monophosphate 5 kinase

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
PIP5K9 interacts with CINV1 to negatively regulate sugar-mediated root cell elongation. 17220200

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G09920 0.5kb upstream 0.5kb upstream 6710   true Chr3: 3038780-3045489
AT3G09920 0.5kb upstream 0.5kb upstream 500   false Chr3: 3044990-3045489
AT3G09920 0.5kb downstream 0.5kb downstream 6710   true Chr3: 3038280-3044989
AT3G09920 0.5kb downstream 0.5kb downstream 500   false Chr3: 3038280-3038779
AT3G09920 1.0kb upstream 1.0kb upstream 7210   true Chr3: 3038780-3045989
AT3G09920 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3044990-3045989
AT3G09920 1.0kb downstream 1.0kb downstream 7210   true Chr3: 3037780-3044989
AT3G09920 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3037780-3038779
AT3G09920 3.0kb upstream 3.0kb upstream 9210   true Chr3: 3038780-3047989
AT3G09920 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3044990-3047989
AT3G09920 3.0kb downstream 3.0kb downstream 9210   true Chr3: 3035780-3044989
AT3G09920 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3035780-3038779

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Function

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
04070 Phosphatidylinositol signaling system
00562 Inositol phosphate metabolism
04144 Endocytosis

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Expression

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Interactions

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139