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Gene : TGA6 A. thaliana

Gene ID  ? AT3G12250
Brief Description  TGACG motif-binding factor 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TGACG motif-binding factor 6 (TGA6); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), DNA/RNA non-specific endonuclease, active site (InterPro:IPR018524); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G06950.4).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? basic leucine zipper transcription factor involved in the activation of SA-responsive genes.  Source: TAIR, Jun 30, 2015.
Name  ? TGACG motif-binding factor 6
  • synonyms:
  • BZIP45

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3 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
ABF2, an ABF subfamily member of bZIP proteins interacting with the ABA-responsive elements, is involved in Absicic ascid/stress responses. (bZIP) in arabidopsis. 15361142
data show TGA factors, which are essential for the salicylic acid (SA)-dependent establishment of systemic acquired resistance, play a pivotal role in the activation of the jasmonic acid/ethylene pathway, both after pathogen infection & hormone treatment 19832945
TGA factors 2, 5, and 6 activate oxylipin-responsive gene expression but impede inhibition of root growth by oxylipins. 23349138

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G12250 0.5kb upstream 0.5kb upstream 4061   true Chr3: 3904923-3908983
AT3G12250 0.5kb upstream 0.5kb upstream 500   false Chr3: 3904923-3905422
AT3G12250 0.5kb downstream 0.5kb downstream 4061   true Chr3: 3905423-3909483
AT3G12250 0.5kb downstream 0.5kb downstream 500   false Chr3: 3908984-3909483
AT3G12250 1.0kb upstream 1.0kb upstream 4561   true Chr3: 3904423-3908983
AT3G12250 1.0kb upstream 1.0kb upstream 1000   false Chr3: 3904423-3905422
AT3G12250 1.0kb downstream 1.0kb downstream 4561   true Chr3: 3905423-3909983
AT3G12250 1.0kb downstream 1.0kb downstream 1000   false Chr3: 3908984-3909983
AT3G12250 3.0kb upstream 3.0kb upstream 6561   true Chr3: 3902423-3908983
AT3G12250 3.0kb upstream 3.0kb upstream 3000   false Chr3: 3902423-3905422
AT3G12250 3.0kb downstream 3.0kb downstream 6561   true Chr3: 3905423-3911983
AT3G12250 3.0kb downstream 3.0kb downstream 3000   false Chr3: 3908984-3911983

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

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Expression

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Interactions

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139