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Gene : HAC5 A. thaliana

Gene ID  ? AT3G12980
Brief Description  histone acetyltransferase of the CBP family 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? histone acetyltransferase of the CBP family 5 (HAC5); FUNCTIONS IN: histone acetyltransferase activity; INVOLVED IN: flower development, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.  Source: TAIR, Jun 30, 2015.
Name  ? histone acetyltransferase of the CBP family 5
  • synonyms:
  • ATHPCAT4,
  • HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G12980 0.5kb upstream 0.5kb upstream 8997   true Chr3: 4145899-4154895
AT3G12980 0.5kb upstream 0.5kb upstream 500   false Chr3: 4145899-4146398
AT3G12980 0.5kb downstream 0.5kb downstream 8997   true Chr3: 4146399-4155395
AT3G12980 0.5kb downstream 0.5kb downstream 500   false Chr3: 4154896-4155395
AT3G12980 1.0kb upstream 1.0kb upstream 9497   true Chr3: 4145399-4154895
AT3G12980 1.0kb upstream 1.0kb upstream 1000   false Chr3: 4145399-4146398
AT3G12980 1.0kb downstream 1.0kb downstream 9497   true Chr3: 4146399-4155895
AT3G12980 1.0kb downstream 1.0kb downstream 1000   false Chr3: 4154896-4155895
AT3G12980 3.0kb upstream 3.0kb upstream 11497   true Chr3: 4143399-4154895
AT3G12980 3.0kb upstream 3.0kb upstream 3000   false Chr3: 4143399-4146398
AT3G12980 3.0kb downstream 3.0kb downstream 11497   true Chr3: 4146399-4157895
AT3G12980 3.0kb downstream 3.0kb downstream 3000   false Chr3: 4154896-4157895

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Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139