help  | faq  | software  | ARAPORT

Gene : AT3G13580 A. thaliana

Gene ID  ? AT3G13580
Brief Description  Ribosomal protein L30/L7 family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The expression of RPL7D in Arabidopsis is reported. 17889453

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G13580 0.5kb upstream 0.5kb upstream 2759   true Chr3: 4432547-4435305
AT3G13580 0.5kb upstream 0.5kb upstream 500   false Chr3: 4432547-4433046
AT3G13580 0.5kb downstream 0.5kb downstream 2759   true Chr3: 4433047-4435805
AT3G13580 0.5kb downstream 0.5kb downstream 500   false Chr3: 4435306-4435805
AT3G13580 1.0kb upstream 1.0kb upstream 3259   true Chr3: 4432047-4435305
AT3G13580 1.0kb upstream 1.0kb upstream 1000   false Chr3: 4432047-4433046
AT3G13580 1.0kb downstream 1.0kb downstream 3259   true Chr3: 4433047-4436305
AT3G13580 1.0kb downstream 1.0kb downstream 1000   false Chr3: 4435306-4436305
AT3G13580 3.0kb upstream 3.0kb upstream 5259   true Chr3: 4430047-4435305
AT3G13580 3.0kb upstream 3.0kb upstream 3000   false Chr3: 4430047-4433046
AT3G13580 3.0kb downstream 3.0kb downstream 5259   true Chr3: 4433047-4438305
AT3G13580 3.0kb downstream 3.0kb downstream 3000   false Chr3: 4435306-4438305

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
03010 Ribosome

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139