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Gene : EIF4A1 A. thaliana

Gene ID  ? AT3G13920
Brief Description  eukaryotic translation initiation factor 4A1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? eukaryotic translation initiation factor 4A-1  Source: TAIR, Jun 30, 2015.
Name  ? eukaryotic translation initiation factor 4A1
  • synonyms:
  • TIF4A1,
  • RH4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G13920 0.5kb upstream 0.5kb upstream 3333   true Chr3: 4592248-4595580
AT3G13920 0.5kb upstream 0.5kb upstream 500   false Chr3: 4595081-4595580
AT3G13920 0.5kb downstream 0.5kb downstream 3333   true Chr3: 4591748-4595080
AT3G13920 0.5kb downstream 0.5kb downstream 500   false Chr3: 4591748-4592247
AT3G13920 1.0kb upstream 1.0kb upstream 3833   true Chr3: 4592248-4596080
AT3G13920 1.0kb upstream 1.0kb upstream 1000   false Chr3: 4595081-4596080
AT3G13920 1.0kb downstream 1.0kb downstream 3833   true Chr3: 4591248-4595080
AT3G13920 1.0kb downstream 1.0kb downstream 1000   false Chr3: 4591248-4592247
AT3G13920 3.0kb upstream 3.0kb upstream 5833   true Chr3: 4592248-4598080
AT3G13920 3.0kb upstream 3.0kb upstream 3000   false Chr3: 4595081-4598080
AT3G13920 3.0kb downstream 3.0kb downstream 5833   true Chr3: 4589248-4595080
AT3G13920 3.0kb downstream 3.0kb downstream 3000   false Chr3: 4589248-4592247

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1 Pathways

Data Source: KEGG

Identifier Name
03013 RNA transport

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139