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Gene : CRSH A. thaliana

Gene ID  ? AT3G17470
Brief Description  Ca2 -activated RelA/spot-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ca2 -activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1).  Source: TAIR, Jun 30, 2015.
Name  ? Ca2 -activated RelA/spot homolog
  • synonyms:
  • ATCRSH

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Arabidopsis CRSH, localized in chloroplasts, is required for host plant fertilization.[CRSH] 18178586

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G17470 0.5kb upstream 0.5kb upstream 2832   true Chr3: 5979314-5982145
AT3G17470 0.5kb upstream 0.5kb upstream 500   false Chr3: 5979314-5979813
AT3G17470 0.5kb downstream 0.5kb downstream 2832   true Chr3: 5979814-5982645
AT3G17470 0.5kb downstream 0.5kb downstream 500   false Chr3: 5982146-5982645
AT3G17470 1.0kb upstream 1.0kb upstream 3332   true Chr3: 5978814-5982145
AT3G17470 1.0kb upstream 1.0kb upstream 1000   false Chr3: 5978814-5979813
AT3G17470 1.0kb downstream 1.0kb downstream 3332   true Chr3: 5979814-5983145
AT3G17470 1.0kb downstream 1.0kb downstream 1000   false Chr3: 5982146-5983145
AT3G17470 3.0kb upstream 3.0kb upstream 5332   true Chr3: 5976814-5982145
AT3G17470 3.0kb upstream 3.0kb upstream 3000   false Chr3: 5976814-5979813
AT3G17470 3.0kb downstream 3.0kb downstream 5332   true Chr3: 5979814-5985145
AT3G17470 3.0kb downstream 3.0kb downstream 3000   false Chr3: 5982146-5985145

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0 Pathways

Data Source: KEGG

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Homology

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016