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Gene : UNG A. thaliana

Gene ID  ? AT3G18630
Brief Description  uracil dna glycosylase  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? uracil dna glycosylase (UNG); FUNCTIONS IN: uracil DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Uracil-DNA glycosylase (InterPro:IPR002043), Uracil-DNA glycosylase-like (InterPro:IPR005122); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10550.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.  Source: TAIR, Jun 30, 2015.
Name  ? uracil dna glycosylase
  • synonyms:
  • uracil dna glycosylase,

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
These results suggest that uracil DNA glycosylase AtUNG is the major uracil DNA glycosylase activity in Arabidopsis. 20056608


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G18630 0.5kb upstream 0.5kb upstream 2739   true Chr3: 6410958-6413696
AT3G18630 0.5kb upstream 0.5kb upstream 500   false Chr3: 6413197-6413696
AT3G18630 0.5kb downstream 0.5kb downstream 2739   true Chr3: 6410458-6413196
AT3G18630 0.5kb downstream 0.5kb downstream 500   false Chr3: 6410458-6410957
AT3G18630 1.0kb upstream 1.0kb upstream 3239   true Chr3: 6410958-6414196
AT3G18630 1.0kb upstream 1.0kb upstream 1000   false Chr3: 6413197-6414196
AT3G18630 1.0kb downstream 1.0kb downstream 3239   true Chr3: 6409958-6413196
AT3G18630 1.0kb downstream 1.0kb downstream 1000   false Chr3: 6409958-6410957
AT3G18630 3.0kb upstream 3.0kb upstream 5239   true Chr3: 6410958-6416196
AT3G18630 3.0kb upstream 3.0kb upstream 3000   false Chr3: 6413197-6416196
AT3G18630 3.0kb downstream 3.0kb downstream 5239   true Chr3: 6407958-6413196
AT3G18630 3.0kb downstream 3.0kb downstream 3000   false Chr3: 6407958-6410957


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1 Pathways

Data Source: KEGG

Identifier Name
03410 Base excision repair

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Array Expression

RNA-seq Expression


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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016