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Gene : AT3G19020 A. thaliana

Gene ID  ? AT3G19020
Brief Description  Leucine-rich repeat (LRR) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G49490.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G19020 0.5kb upstream 0.5kb upstream 3914   true Chr3: 6558964-6562877
AT3G19020 0.5kb upstream 0.5kb upstream 500   false Chr3: 6562378-6562877
AT3G19020 0.5kb downstream 0.5kb downstream 3914   true Chr3: 6558464-6562377
AT3G19020 0.5kb downstream 0.5kb downstream 500   false Chr3: 6558464-6558963
AT3G19020 1.0kb upstream 1.0kb upstream 4414   true Chr3: 6558964-6563377
AT3G19020 1.0kb upstream 1.0kb upstream 1000   false Chr3: 6562378-6563377
AT3G19020 1.0kb downstream 1.0kb downstream 4414   true Chr3: 6557964-6562377
AT3G19020 1.0kb downstream 1.0kb downstream 1000   false Chr3: 6557964-6558963
AT3G19020 3.0kb upstream 3.0kb upstream 6414   true Chr3: 6558964-6565377
AT3G19020 3.0kb upstream 3.0kb upstream 3000   false Chr3: 6562378-6565377
AT3G19020 3.0kb downstream 3.0kb downstream 6414   true Chr3: 6555964-6562377
AT3G19020 3.0kb downstream 3.0kb downstream 3000   false Chr3: 6555964-6558963

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0