help  | faq  | software  | ARAPORT

Gene : AT3G21540 A. thaliana

Gene ID  ? AT3G21540
Brief Description  transducin family protein / WD-40 repeat family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G21540 0.5kb upstream 0.5kb upstream 5613   true Chr3: 7585886-7591498
AT3G21540 0.5kb upstream 0.5kb upstream 500   false Chr3: 7590999-7591498
AT3G21540 0.5kb downstream 0.5kb downstream 5613   true Chr3: 7585386-7590998
AT3G21540 0.5kb downstream 0.5kb downstream 500   false Chr3: 7585386-7585885
AT3G21540 1.0kb upstream 1.0kb upstream 6113   true Chr3: 7585886-7591998
AT3G21540 1.0kb upstream 1.0kb upstream 1000   false Chr3: 7590999-7591998
AT3G21540 1.0kb downstream 1.0kb downstream 6113   true Chr3: 7584886-7590998
AT3G21540 1.0kb downstream 1.0kb downstream 1000   false Chr3: 7584886-7585885
AT3G21540 3.0kb upstream 3.0kb upstream 8113   true Chr3: 7585886-7593998
AT3G21540 3.0kb upstream 3.0kb upstream 3000   false Chr3: 7590999-7593998
AT3G21540 3.0kb downstream 3.0kb downstream 8113   true Chr3: 7582886-7590998
AT3G21540 3.0kb downstream 3.0kb downstream 3000   false Chr3: 7582886-7585885

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
03008 Ribosome biogenesis in eukaryotes

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139