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Gene : PMH1 A. thaliana

Gene ID  ? AT3G22310
Brief Description  putative mitochondrial RNA helicase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? putative mitochondrial RNA helicase 1 (PMH1); CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.  Source: TAIR, Jun 30, 2015.
Name  ? putative mitochondrial RNA helicase 1
  • synonyms:
  • RNA HELICASE 9,
  • ATRH9

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
PMH1 and PMH2 (for PUTATIVE MITOCHONDRIAL RNA HELICASE), were analyzed and characterized in mitochondria of Arabidopsis 17951454
AtRH9 and AtRH25 affect seed germination under salt stress conditions. 18725370

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G22310 0.5kb upstream 0.5kb upstream 3378   true Chr3: 7886776-7890153
AT3G22310 0.5kb upstream 0.5kb upstream 500   false Chr3: 7886776-7887275
AT3G22310 0.5kb downstream 0.5kb downstream 3378   true Chr3: 7887276-7890653
AT3G22310 0.5kb downstream 0.5kb downstream 500   false Chr3: 7890154-7890653
AT3G22310 1.0kb upstream 1.0kb upstream 3878   true Chr3: 7886276-7890153
AT3G22310 1.0kb upstream 1.0kb upstream 1000   false Chr3: 7886276-7887275
AT3G22310 1.0kb downstream 1.0kb downstream 3878   true Chr3: 7887276-7891153
AT3G22310 1.0kb downstream 1.0kb downstream 1000   false Chr3: 7890154-7891153
AT3G22310 3.0kb upstream 3.0kb upstream 5878   true Chr3: 7884276-7890153
AT3G22310 3.0kb upstream 3.0kb upstream 3000   false Chr3: 7884276-7887275
AT3G22310 3.0kb downstream 3.0kb downstream 5878   true Chr3: 7887276-7893153
AT3G22310 3.0kb downstream 3.0kb downstream 3000   false Chr3: 7890154-7893153

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139