help  | faq  | software  | ARAPORT

Gene : AT3G22690 A. thaliana

Gene ID  ? AT3G22690
Brief Description  LOW protein: PPR containing-like protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
YS1 (Yellow Seedlings 1) is required for correct plastid gene expression during early chloroplast development. [YS1] 19054358

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G22690 0.5kb upstream 0.5kb upstream 3866   true Chr3: 8021229-8025094
AT3G22690 0.5kb upstream 0.5kb upstream 500   false Chr3: 8024595-8025094
AT3G22690 0.5kb downstream 0.5kb downstream 3866   true Chr3: 8020729-8024594
AT3G22690 0.5kb downstream 0.5kb downstream 500   false Chr3: 8020729-8021228
AT3G22690 1.0kb upstream 1.0kb upstream 4366   true Chr3: 8021229-8025594
AT3G22690 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8024595-8025594
AT3G22690 1.0kb downstream 1.0kb downstream 4366   true Chr3: 8020229-8024594
AT3G22690 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8020229-8021228
AT3G22690 3.0kb upstream 3.0kb upstream 6366   true Chr3: 8021229-8027594
AT3G22690 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8024595-8027594
AT3G22690 3.0kb downstream 3.0kb downstream 6366   true Chr3: 8018229-8024594
AT3G22690 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8018229-8021228

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016