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Gene : LFR A. thaliana

Gene ID  ? AT3G22990
Brief Description  ARM repeat superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
LFR gene is required for the formation of anther cell layers and normal expression of key regulatory genes. 22461668


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G22990 0.5kb upstream 0.5kb upstream 2910   true Chr3: 8163441-8166350
AT3G22990 0.5kb upstream 0.5kb upstream 500   false Chr3: 8163441-8163940
AT3G22990 0.5kb downstream 0.5kb downstream 2910   true Chr3: 8163941-8166850
AT3G22990 0.5kb downstream 0.5kb downstream 500   false Chr3: 8166351-8166850
AT3G22990 1.0kb upstream 1.0kb upstream 3410   true Chr3: 8162941-8166350
AT3G22990 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8162941-8163940
AT3G22990 1.0kb downstream 1.0kb downstream 3410   true Chr3: 8163941-8167350
AT3G22990 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8166351-8167350
AT3G22990 3.0kb upstream 3.0kb upstream 5410   true Chr3: 8160941-8166350
AT3G22990 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8160941-8163940
AT3G22990 3.0kb downstream 3.0kb downstream 5410   true Chr3: 8163941-8169350
AT3G22990 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8166351-8169350


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0 Pathways

Data Source: KEGG

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Array Expression

RNA-seq Expression


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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016