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Gene : AT3G24030 A. thaliana

Gene ID  ? AT3G24030
Brief Description  hydroxyethylthiazole kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? hydroxyethylthiazole kinase family protein; FUNCTIONS IN: catalytic activity, hydroxyethylthiazole kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hydroxyethylthiazole kinase (InterPro:IPR000417), Hydroxyethylthiazole kinase, monofunctional (InterPro:IPR011144).  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data indicate that the THI4 (AT5G54770) and the ThiM (AT3G24030)/THI4 mutants did not grow, as was expected, and the ThiM single mutant grew normally. 23816351


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G24030 0.5kb upstream 0.5kb upstream 1587   true Chr3: 8679819-8681405
AT3G24030 0.5kb upstream 0.5kb upstream 500   false Chr3: 8680906-8681405
AT3G24030 0.5kb downstream 0.5kb downstream 1587   true Chr3: 8679319-8680905
AT3G24030 0.5kb downstream 0.5kb downstream 500   false Chr3: 8679319-8679818
AT3G24030 1.0kb upstream 1.0kb upstream 2087   true Chr3: 8679819-8681905
AT3G24030 1.0kb upstream 1.0kb upstream 1000   false Chr3: 8680906-8681905
AT3G24030 1.0kb downstream 1.0kb downstream 2087   true Chr3: 8678819-8680905
AT3G24030 1.0kb downstream 1.0kb downstream 1000   false Chr3: 8678819-8679818
AT3G24030 3.0kb upstream 3.0kb upstream 4087   true Chr3: 8679819-8683905
AT3G24030 3.0kb upstream 3.0kb upstream 3000   false Chr3: 8680906-8683905
AT3G24030 3.0kb downstream 3.0kb downstream 4087   true Chr3: 8676819-8680905
AT3G24030 3.0kb downstream 3.0kb downstream 3000   false Chr3: 8676819-8679818


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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00730 Thiamine metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016