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Gene : CDC45 A. thaliana

Gene ID  ? AT3G25100
Brief Description  cell division cycle 45  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cell division cycle 45 (CDC45); CONTAINS InterPro DOMAIN/s: CDC45-like protein (InterPro:IPR003874).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45  Source: TAIR, Jun 30, 2015.
Name  ? cell division cycle 45

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G25100 0.5kb upstream 0.5kb upstream 2821   true Chr3: 9143416-9146236
AT3G25100 0.5kb upstream 0.5kb upstream 500   false Chr3: 9143416-9143915
AT3G25100 0.5kb downstream 0.5kb downstream 2821   true Chr3: 9143916-9146736
AT3G25100 0.5kb downstream 0.5kb downstream 500   false Chr3: 9146237-9146736
AT3G25100 1.0kb upstream 1.0kb upstream 3321   true Chr3: 9142916-9146236
AT3G25100 1.0kb upstream 1.0kb upstream 1000   false Chr3: 9142916-9143915
AT3G25100 1.0kb downstream 1.0kb downstream 3321   true Chr3: 9143916-9147236
AT3G25100 1.0kb downstream 1.0kb downstream 1000   false Chr3: 9146237-9147236
AT3G25100 3.0kb upstream 3.0kb upstream 5321   true Chr3: 9140916-9146236
AT3G25100 3.0kb upstream 3.0kb upstream 3000   false Chr3: 9140916-9143915
AT3G25100 3.0kb downstream 3.0kb downstream 5321   true Chr3: 9143916-9149236
AT3G25100 3.0kb downstream 3.0kb downstream 3000   false Chr3: 9146237-9149236

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0