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Gene : SDH2-1 A. thaliana

Gene ID  ? AT3G27380
Brief Description  succinate dehydrogenase 2-1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? succinate dehydrogenase 2-1 (SDH2-1); FUNCTIONS IN: electron carrier activity, zinc ion binding, succinate dehydrogenase activity; INVOLVED IN: mitochondrial electron transport, succinate to ubiquinone; LOCATED IN: mitochondrion, succinate dehydrogenase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-2 (TAIR:AT5G40650.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.  Source: TAIR, Jun 30, 2015.
Name  ? succinate dehydrogenase 2-1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
An analysis of the expression of SDH2-1, SDH2-2, and SDH2-3 (not detected) in A. thaliana, including differential expression in plant organs. 15563621
during germination the embryo-specific SDH2-3 is replaced by SDH2-1 or SDH2-2 in mitochondrial complex II 16249327


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G27380 0.5kb upstream 0.5kb upstream 3773   true Chr3: 10129610-10133382
AT3G27380 0.5kb upstream 0.5kb upstream 500   false Chr3: 10132883-10133382
AT3G27380 0.5kb downstream 0.5kb downstream 3773   true Chr3: 10129110-10132882
AT3G27380 0.5kb downstream 0.5kb downstream 500   false Chr3: 10129110-10129609
AT3G27380 1.0kb upstream 1.0kb upstream 4273   true Chr3: 10129610-10133882
AT3G27380 1.0kb upstream 1.0kb upstream 1000   false Chr3: 10132883-10133882
AT3G27380 1.0kb downstream 1.0kb downstream 4273   true Chr3: 10128610-10132882
AT3G27380 1.0kb downstream 1.0kb downstream 1000   false Chr3: 10128610-10129609
AT3G27380 3.0kb upstream 3.0kb upstream 6273   true Chr3: 10129610-10135882
AT3G27380 3.0kb upstream 3.0kb upstream 3000   false Chr3: 10132883-10135882
AT3G27380 3.0kb downstream 3.0kb downstream 6273   true Chr3: 10126610-10132882
AT3G27380 3.0kb downstream 3.0kb downstream 3000   false Chr3: 10126610-10129609


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5 Pathways

Data Source: KEGG

Identifier Name
00190 Oxidative phosphorylation
00020 Citrate cycle (TCA cycle)
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
01200 Carbon metabolism

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016