help  | faq  | software  | ARAPORT

Gene : PHS1 A. thaliana

Gene ID  ? AT3G29320
Brief Description  Glycosyl transferase, family 35  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Glycosyl transferase, family 35; FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to water deprivation, response to temperature stimulus; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833), Glycosyl transferase, family 35 (InterPro:IPR000811); BEST Arabidopsis thaliana protein match is: alpha-glucan phosphorylase 2 (TAIR:AT3G46970.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.  Source: TAIR, Jun 30, 2015.
Name  ? alpha-glucan phosphorylase 1

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G29320 0.5kb upstream 0.5kb upstream 5508   true Chr3: 11252307-11257814
AT3G29320 0.5kb upstream 0.5kb upstream 500   false Chr3: 11252307-11252806
AT3G29320 0.5kb downstream 0.5kb downstream 5508   true Chr3: 11252807-11258314
AT3G29320 0.5kb downstream 0.5kb downstream 500   false Chr3: 11257815-11258314
AT3G29320 1.0kb upstream 1.0kb upstream 6008   true Chr3: 11251807-11257814
AT3G29320 1.0kb upstream 1.0kb upstream 1000   false Chr3: 11251807-11252806
AT3G29320 1.0kb downstream 1.0kb downstream 6008   true Chr3: 11252807-11258814
AT3G29320 1.0kb downstream 1.0kb downstream 1000   false Chr3: 11257815-11258814
AT3G29320 3.0kb upstream 3.0kb upstream 8008   true Chr3: 11249807-11257814
AT3G29320 3.0kb upstream 3.0kb upstream 3000   false Chr3: 11249807-11252806
AT3G29320 3.0kb downstream 3.0kb downstream 8008   true Chr3: 11252807-11260814
AT3G29320 3.0kb downstream 3.0kb downstream 3000   false Chr3: 11257815-11260814

Proteins

Protein Displayer


Function

Gene Ontology Displayer

4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00500 Starch and sucrose metabolism
04931 Insulin resistance

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139