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Gene : J3 A. thaliana

Gene ID  ? AT3G44110
Brief Description  DNAJ homologue 3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? homologous to the co-chaperon DNAJ protein from E coli  Source: TAIR, Jun 30, 2015.

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Results indicate that the expression of AtJ2 and AtJ3 genes is involved in response to many environmental stresses except salt stress. 15692178
J3 regulates plasma membrane H+-ATPase activity through interaction with the PKS5 kinase. 20418496
Loss of function of J3 delays flowering time in Arabidopsis, and regulates the expression of SOC1 and FT. 21343416
Data suggest that J3 activity in leaves mainly contributes to its role in regulating flowering time 21494090

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G44110 0.5kb upstream 0.5kb upstream 3126   true Chr3: 15868631-15871756
AT3G44110 0.5kb upstream 0.5kb upstream 500   false Chr3: 15871257-15871756
AT3G44110 0.5kb downstream 0.5kb downstream 3126   true Chr3: 15868131-15871256
AT3G44110 0.5kb downstream 0.5kb downstream 500   false Chr3: 15868131-15868630
AT3G44110 1.0kb upstream 1.0kb upstream 3626   true Chr3: 15868631-15872256
AT3G44110 1.0kb upstream 1.0kb upstream 1000   false Chr3: 15871257-15872256
AT3G44110 1.0kb downstream 1.0kb downstream 3626   true Chr3: 15867631-15871256
AT3G44110 1.0kb downstream 1.0kb downstream 1000   false Chr3: 15867631-15868630
AT3G44110 3.0kb upstream 3.0kb upstream 5626   true Chr3: 15868631-15874256
AT3G44110 3.0kb upstream 3.0kb upstream 3000   false Chr3: 15871257-15874256
AT3G44110 3.0kb downstream 3.0kb downstream 5626   true Chr3: 15865631-15871256
AT3G44110 3.0kb downstream 3.0kb downstream 3000   false Chr3: 15865631-15868630

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04141 Protein processing in endoplasmic reticulum

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Expression

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Interactions

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Homology

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139