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Gene : CEF A. thaliana

Gene ID  ? AT3G44340
Brief Description  hypothetical protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? clone eighty-four (CEF); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G32640.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.  Source: TAIR, Jun 30, 2015.
Name  ? clone eighty-four

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G44340 0.5kb upstream 0.5kb upstream 9290   true Chr3: 16011547-16020836
AT3G44340 0.5kb upstream 0.5kb upstream 500   false Chr3: 16020337-16020836
AT3G44340 0.5kb downstream 0.5kb downstream 9290   true Chr3: 16011047-16020336
AT3G44340 0.5kb downstream 0.5kb downstream 500   false Chr3: 16011047-16011546
AT3G44340 1.0kb upstream 1.0kb upstream 9790   true Chr3: 16011547-16021336
AT3G44340 1.0kb upstream 1.0kb upstream 1000   false Chr3: 16020337-16021336
AT3G44340 1.0kb downstream 1.0kb downstream 9790   true Chr3: 16010547-16020336
AT3G44340 1.0kb downstream 1.0kb downstream 1000   false Chr3: 16010547-16011546
AT3G44340 3.0kb upstream 3.0kb upstream 11790   true Chr3: 16011547-16023336
AT3G44340 3.0kb upstream 3.0kb upstream 3000   false Chr3: 16020337-16023336
AT3G44340 3.0kb downstream 3.0kb downstream 11790   true Chr3: 16008547-16020336
AT3G44340 3.0kb downstream 3.0kb downstream 3000   false Chr3: 16008547-16011546

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1 Pathways

Data Source: KEGG

Identifier Name
04141 Protein processing in endoplasmic reticulum

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139