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Gene : DOF6 A. thaliana

Gene ID  ? AT3G45610
Brief Description  Dof-type zinc finger DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1).  Source: TAIR, Jun 30, 2015.
Name  ? DOF transcription factor 6

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
DOF6 negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of ABA-related genes. [DOF6] 22155632

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G45610 0.5kb upstream 0.5kb upstream 1800   true Chr3: 16739247-16741046
AT3G45610 0.5kb upstream 0.5kb upstream 500   false Chr3: 16740547-16741046
AT3G45610 0.5kb downstream 0.5kb downstream 1800   true Chr3: 16738747-16740546
AT3G45610 0.5kb downstream 0.5kb downstream 500   false Chr3: 16738747-16739246
AT3G45610 1.0kb upstream 1.0kb upstream 2300   true Chr3: 16739247-16741546
AT3G45610 1.0kb upstream 1.0kb upstream 1000   false Chr3: 16740547-16741546
AT3G45610 1.0kb downstream 1.0kb downstream 2300   true Chr3: 16738247-16740546
AT3G45610 1.0kb downstream 1.0kb downstream 1000   false Chr3: 16738247-16739246
AT3G45610 3.0kb upstream 3.0kb upstream 4300   true Chr3: 16739247-16743546
AT3G45610 3.0kb upstream 3.0kb upstream 3000   false Chr3: 16740547-16743546
AT3G45610 3.0kb downstream 3.0kb downstream 4300   true Chr3: 16736247-16740546
AT3G45610 3.0kb downstream 3.0kb downstream 3000   false Chr3: 16736247-16739246

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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Homology

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139