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Gene : AT3G46210 A. thaliana

Gene ID  ? AT3G46210
Brief Description  Ribosomal protein S5 domain 2-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G46210 0.5kb upstream 0.5kb upstream 2793   true Chr3: 16976631-16979423
AT3G46210 0.5kb upstream 0.5kb upstream 500   false Chr3: 16978924-16979423
AT3G46210 0.5kb downstream 0.5kb downstream 2793   true Chr3: 16976131-16978923
AT3G46210 0.5kb downstream 0.5kb downstream 500   false Chr3: 16976131-16976630
AT3G46210 1.0kb upstream 1.0kb upstream 3293   true Chr3: 16976631-16979923
AT3G46210 1.0kb upstream 1.0kb upstream 1000   false Chr3: 16978924-16979923
AT3G46210 1.0kb downstream 1.0kb downstream 3293   true Chr3: 16975631-16978923
AT3G46210 1.0kb downstream 1.0kb downstream 1000   false Chr3: 16975631-16976630
AT3G46210 3.0kb upstream 3.0kb upstream 5293   true Chr3: 16976631-16981923
AT3G46210 3.0kb upstream 3.0kb upstream 3000   false Chr3: 16978924-16981923
AT3G46210 3.0kb downstream 3.0kb downstream 5293   true Chr3: 16973631-16978923
AT3G46210 3.0kb downstream 3.0kb downstream 3000   false Chr3: 16973631-16976630

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03018 RNA degradation

Gene --> Ontology term

Gene --> Pathways


Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139