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Gene : UBC13 A. thaliana

Gene ID  ? AT3G46460
Brief Description  ubiquitin-conjugating enzyme 13  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ubiquitin-conjugating enzyme 13 (UBC13); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 7 (TAIR:AT5G59300.1).  Source: TAIR, Jun 30, 2015.
Name  ? ubiquitin-conjugating enzyme 13

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G46460 0.5kb upstream 0.5kb upstream 2260   true Chr3: 17095706-17097965
AT3G46460 0.5kb upstream 0.5kb upstream 500   false Chr3: 17097466-17097965
AT3G46460 0.5kb downstream 0.5kb downstream 2260   true Chr3: 17095206-17097465
AT3G46460 0.5kb downstream 0.5kb downstream 500   false Chr3: 17095206-17095705
AT3G46460 1.0kb upstream 1.0kb upstream 2760   true Chr3: 17095706-17098465
AT3G46460 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17097466-17098465
AT3G46460 1.0kb downstream 1.0kb downstream 2760   true Chr3: 17094706-17097465
AT3G46460 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17094706-17095705
AT3G46460 3.0kb upstream 3.0kb upstream 4760   true Chr3: 17095706-17100465
AT3G46460 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17097466-17100465
AT3G46460 3.0kb downstream 3.0kb downstream 4760   true Chr3: 17092706-17097465
AT3G46460 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17092706-17095705

Proteins

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
04141 Protein processing in endoplasmic reticulum
04120 Ubiquitin mediated proteolysis

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0