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Gene : AT3G47110 A. thaliana

Gene ID  ? AT3G47110
Brief Description  Leucine-rich repeat protein kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EF-TU receptor (TAIR:AT5G20480.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47110 0.5kb upstream 0.5kb upstream 4351   true Chr3: 17347103-17351453
AT3G47110 0.5kb upstream 0.5kb upstream 500   false Chr3: 17350954-17351453
AT3G47110 0.5kb downstream 0.5kb downstream 4351   true Chr3: 17346603-17350953
AT3G47110 0.5kb downstream 0.5kb downstream 500   false Chr3: 17346603-17347102
AT3G47110 1.0kb upstream 1.0kb upstream 4851   true Chr3: 17347103-17351953
AT3G47110 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17350954-17351953
AT3G47110 1.0kb downstream 1.0kb downstream 4851   true Chr3: 17346103-17350953
AT3G47110 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17346103-17347102
AT3G47110 3.0kb upstream 3.0kb upstream 6851   true Chr3: 17347103-17353953
AT3G47110 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17350954-17353953
AT3G47110 3.0kb downstream 3.0kb downstream 6851   true Chr3: 17344103-17350953
AT3G47110 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17344103-17347102

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139