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Gene : ASN1 A. thaliana

Gene ID  ? AT3G47340
Brief Description  glutamine-dependent asparagine synthase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? glutamine-dependent asparagine synthase 1 (ASN1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: asparagine synthetase 2 (TAIR:AT5G65010.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.  Source: TAIR, Jun 30, 2015.
Name  ? glutamine-dependent asparagine synthase 1
  • synonyms:
  • AT-ASN1,
  • ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1,
  • DIN6,
  • DARK INDUCIBLE 6

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
bZIP11 target processes are identified using transiently increased nuclear bZIP11 levels and genome-wide expression analysis; the effect of bZIP11 on ASN1 and GBF6 are reported. 18088315

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47340 0.5kb upstream 0.5kb upstream 4092   true Chr3: 17437840-17441931
AT3G47340 0.5kb upstream 0.5kb upstream 500   false Chr3: 17441432-17441931
AT3G47340 0.5kb downstream 0.5kb downstream 4092   true Chr3: 17437340-17441431
AT3G47340 0.5kb downstream 0.5kb downstream 500   false Chr3: 17437340-17437839
AT3G47340 1.0kb upstream 1.0kb upstream 4592   true Chr3: 17437840-17442431
AT3G47340 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17441432-17442431
AT3G47340 1.0kb downstream 1.0kb downstream 4592   true Chr3: 17436840-17441431
AT3G47340 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17436840-17437839
AT3G47340 3.0kb upstream 3.0kb upstream 6592   true Chr3: 17437840-17444431
AT3G47340 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17441432-17444431
AT3G47340 3.0kb downstream 3.0kb downstream 6592   true Chr3: 17434840-17441431
AT3G47340 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17434840-17437839

Proteins

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Function

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00250 Alanine, aspartate and glutamate metabolism

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Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016