help  | faq  | software  | ARAPORT

Gene : AT3G47400 A. thaliana

Gene ID  ? AT3G47400
Brief Description  Plant invertase/pectin methylesterase inhibitor superfamily  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: hypocotyl, flower, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G51490.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47400 0.5kb upstream 0.5kb upstream 3109   true Chr3: 17465010-17468118
AT3G47400 0.5kb upstream 0.5kb upstream 500   false Chr3: 17465010-17465509
AT3G47400 0.5kb downstream 0.5kb downstream 3109   true Chr3: 17465510-17468618
AT3G47400 0.5kb downstream 0.5kb downstream 500   false Chr3: 17468119-17468618
AT3G47400 1.0kb upstream 1.0kb upstream 3609   true Chr3: 17464510-17468118
AT3G47400 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17464510-17465509
AT3G47400 1.0kb downstream 1.0kb downstream 3609   true Chr3: 17465510-17469118
AT3G47400 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17468119-17469118
AT3G47400 3.0kb upstream 3.0kb upstream 5609   true Chr3: 17462510-17468118
AT3G47400 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17462510-17465509
AT3G47400 3.0kb downstream 3.0kb downstream 5609   true Chr3: 17465510-17471118
AT3G47400 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17468119-17471118

Proteins

Protein Displayer


Function

Gene Ontology Displayer

3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00500 Starch and sucrose metabolism
00040 Pentose and glucuronate interconversions

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0