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Gene : TCP14 A. thaliana

Gene ID  ? AT3G47620
Brief Description  TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14" (TCP14); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G58100.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.  Source: TAIR, Jun 30, 2015.
Name  ? TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
  • synonyms:
  • TEOSINTE BRANCHED%2C cycloidea and PCF (TCP) 14,
  • AtTCP14

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Together, the two genes, TCP14 and TCP15, influence plant stature by promoting cell division in young internodes. 21668538
DOF6 negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of ABA-related genes. 22155632
Data suggest that responses of leaves and flowers to CK are mediated by SPY-dependent TCP14 and TCP15 activities. 22267487
TCP14 and TCP15 act downstream of the gibberellins and promote seed germination. 25655823
DA1, DAR1, and DAR2 physically interact with the transcription factors TCP14 and TCP15, which repress endoreduplication. 25757472

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G47620 0.5kb upstream 0.5kb upstream 2967   true Chr3: 17558293-17561259
AT3G47620 0.5kb upstream 0.5kb upstream 500   false Chr3: 17558293-17558792
AT3G47620 0.5kb downstream 0.5kb downstream 2967   true Chr3: 17558793-17561759
AT3G47620 0.5kb downstream 0.5kb downstream 500   false Chr3: 17561260-17561759
AT3G47620 1.0kb upstream 1.0kb upstream 3467   true Chr3: 17557793-17561259
AT3G47620 1.0kb upstream 1.0kb upstream 1000   false Chr3: 17557793-17558792
AT3G47620 1.0kb downstream 1.0kb downstream 3467   true Chr3: 17558793-17562259
AT3G47620 1.0kb downstream 1.0kb downstream 1000   false Chr3: 17561260-17562259
AT3G47620 3.0kb upstream 3.0kb upstream 5467   true Chr3: 17555793-17561259
AT3G47620 3.0kb upstream 3.0kb upstream 3000   false Chr3: 17555793-17558792
AT3G47620 3.0kb downstream 3.0kb downstream 5467   true Chr3: 17558793-17564259
AT3G47620 3.0kb downstream 3.0kb downstream 3000   false Chr3: 17561260-17564259

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139