help  | faq  | software  | ARAPORT

Gene : AT3G49370 A. thaliana

Gene ID  ? AT3G49370
Brief Description  Calcium-dependent protein kinase (CDPK) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Calcium-dependent protein kinase (CDPK) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT5G24430.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G49370 0.5kb upstream 0.5kb upstream 3955   true Chr3: 18304637-18308591
AT3G49370 0.5kb upstream 0.5kb upstream 500   false Chr3: 18308092-18308591
AT3G49370 0.5kb downstream 0.5kb downstream 3955   true Chr3: 18304137-18308091
AT3G49370 0.5kb downstream 0.5kb downstream 500   false Chr3: 18304137-18304636
AT3G49370 1.0kb upstream 1.0kb upstream 4455   true Chr3: 18304637-18309091
AT3G49370 1.0kb upstream 1.0kb upstream 1000   false Chr3: 18308092-18309091
AT3G49370 1.0kb downstream 1.0kb downstream 4455   true Chr3: 18303637-18308091
AT3G49370 1.0kb downstream 1.0kb downstream 1000   false Chr3: 18303637-18304636
AT3G49370 3.0kb upstream 3.0kb upstream 6455   true Chr3: 18304637-18311091
AT3G49370 3.0kb upstream 3.0kb upstream 3000   false Chr3: 18308092-18311091
AT3G49370 3.0kb downstream 3.0kb downstream 6455   true Chr3: 18301637-18308091
AT3G49370 3.0kb downstream 3.0kb downstream 3000   false Chr3: 18301637-18304636

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0