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Gene : WDR5a A. thaliana

Gene ID  ? AT3G49660
Brief Description  Transducin/WD40 repeat-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex.  Source: TAIR, Jun 30, 2015.
Name  ? human WDR5 (WD40 repeat) homolog a
  • synonyms:
  • AtWDR5a

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
WDR5a directly interacts with an H3K4 methyltransferase, ARABIDOPSIS TRITHORAX1. 19567704
bZIP28 and bZIP60 interact with Ash2 and WDR5a, both of which are core COMPASS-like components. 25730865


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G49660 0.5kb upstream 0.5kb upstream 2650   true Chr3: 18413064-18415713
AT3G49660 0.5kb upstream 0.5kb upstream 500   false Chr3: 18413064-18413563
AT3G49660 0.5kb downstream 0.5kb downstream 2650   true Chr3: 18413564-18416213
AT3G49660 0.5kb downstream 0.5kb downstream 500   false Chr3: 18415714-18416213
AT3G49660 1.0kb upstream 1.0kb upstream 3150   true Chr3: 18412564-18415713
AT3G49660 1.0kb upstream 1.0kb upstream 1000   false Chr3: 18412564-18413563
AT3G49660 1.0kb downstream 1.0kb downstream 3150   true Chr3: 18413564-18416713
AT3G49660 1.0kb downstream 1.0kb downstream 1000   false Chr3: 18415714-18416713
AT3G49660 3.0kb upstream 3.0kb upstream 5150   true Chr3: 18410564-18415713
AT3G49660 3.0kb upstream 3.0kb upstream 3000   false Chr3: 18410564-18413563
AT3G49660 3.0kb downstream 3.0kb downstream 5150   true Chr3: 18413564-18418713
AT3G49660 3.0kb downstream 3.0kb downstream 3000   false Chr3: 18415714-18418713


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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139