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Gene : VSR1 A. thaliana

Gene ID  ? AT3G52850
Brief Description  vacuolar sorting receptor homolog 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? vacuolar sorting receptor homolog 1 (VSR1); FUNCTIONS IN: amino-terminal vacuolar sorting propeptide binding; INVOLVED IN: Golgi to vacuole transport, vacuolar transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, Golgi apparatus, plasma membrane, integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF calcium-binding (InterPro:IPR013091), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 2 (TAIR:AT2G30290.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles.  Source: TAIR, Jun 30, 2015.
Name  ? vacuolar sorting receptor homolog 1
  • synonyms:
  • BP80B,
  • BP80,
  • ATELP1,
  • BP-80,
  • BP80-1;1,
  • ATVSR1,
  • Green fluorescent seed 1,
  • binding protein of 80 kDa 1;1,
  • ATELP,
  • GFS1,
  • ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN

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7 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
These data suggest that homomeric interaction of AtVSR1 is critical for its function as a vacuolar sorting receptor. 20625000
findings show that that VSR1, VSR3 and VSR4 participate in vacuolar sorting of VAC2 in vegetative tissues, and 12S globulins and 2S albumins in seeds 20807215
VSR1, VSR3, and VSR4 exhibit functional redundancy in their role for the vacuolar trafficking of soluble proteins in vegetative cells. 23175753
In mag1-1 mutants, VSR1 failed to recycle from the PVC to the TGN; rather, a significant proportion was transported to the LV; VSR1 overexpression rescued this defect 23263768
The crystal structures of the protease-associated domain of VSR isoform 1 from Arabidopsis thaliana (VSR1PA) alone and complexed with a cognate peptide containing the barley (Hordeum vulgare) aleurain, are reported. 25271241
N-glycosylation of AtVSR1 plays a critical role in its function as a Vacuolar sorting receptor (VSR) in plants. 25293377
required for osmotic stress-induced abscisic acid biosynthesis 25416474

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G52850 0.5kb upstream 0.5kb upstream 4692   true Chr3: 19587256-19591947
AT3G52850 0.5kb upstream 0.5kb upstream 500   false Chr3: 19587256-19587755
AT3G52850 0.5kb downstream 0.5kb downstream 4692   true Chr3: 19587756-19592447
AT3G52850 0.5kb downstream 0.5kb downstream 500   false Chr3: 19591948-19592447
AT3G52850 1.0kb upstream 1.0kb upstream 5192   true Chr3: 19586756-19591947
AT3G52850 1.0kb upstream 1.0kb upstream 1000   false Chr3: 19586756-19587755
AT3G52850 1.0kb downstream 1.0kb downstream 5192   true Chr3: 19587756-19592947
AT3G52850 1.0kb downstream 1.0kb downstream 1000   false Chr3: 19591948-19592947
AT3G52850 3.0kb upstream 3.0kb upstream 7192   true Chr3: 19584756-19591947
AT3G52850 3.0kb upstream 3.0kb upstream 3000   false Chr3: 19584756-19587755
AT3G52850 3.0kb downstream 3.0kb downstream 7192   true Chr3: 19587756-19594947
AT3G52850 3.0kb downstream 3.0kb downstream 3000   false Chr3: 19591948-19594947

Proteins

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139