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Gene : AP3 A. thaliana

Gene ID  ? AT3G54340
Brief Description  K-box region and MADS-box transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? APETALA 3 (AP3); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 (TAIR:AT5G51870.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.  Source: TAIR, Jun 30, 2015.
Name  ? APETALA 3
  • synonyms:
  • ATAP3

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
truncated form, lacking the conserved C-terminal motifs, functions to direct floral organ identity specification 17965182
BNQ genes Are negatively regulated by AP3 and PI in petals. 20305124
These results imply considerable changes in the composition and topology of the gene network controlled by AP3/PI during the course of flower development. 22847437
Data indicate that C function regulator AGAMOUS and the B function regulators APETALA3 and PISTILLATA control many developmental processes in conjunction, as well as independent activities. 23821642
Ectopic Fagopyrum esculentum AP3 can rescue stamen development in Arabidopsis ap3 mutant. 25149019

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G54340 0.5kb upstream 0.5kb upstream 2675   true Chr3: 20119140-20121814
AT3G54340 0.5kb upstream 0.5kb upstream 500   false Chr3: 20121315-20121814
AT3G54340 0.5kb downstream 0.5kb downstream 2675   true Chr3: 20118640-20121314
AT3G54340 0.5kb downstream 0.5kb downstream 500   false Chr3: 20118640-20119139
AT3G54340 1.0kb upstream 1.0kb upstream 3175   true Chr3: 20119140-20122314
AT3G54340 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20121315-20122314
AT3G54340 1.0kb downstream 1.0kb downstream 3175   true Chr3: 20118140-20121314
AT3G54340 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20118140-20119139
AT3G54340 3.0kb upstream 3.0kb upstream 5175   true Chr3: 20119140-20124314
AT3G54340 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20121315-20124314
AT3G54340 3.0kb downstream 3.0kb downstream 5175   true Chr3: 20116140-20121314
AT3G54340 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20116140-20119139

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139