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Gene : PUR5 A. thaliana

Gene ID  ? AT3G55010
Brief Description  phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? PUR5; FUNCTIONS IN: phosphoribosylformylglycinamidine cyclo-ligase activity, copper ion binding, ATP binding; INVOLVED IN: purine nucleotide biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Phosphoribosylformylglycinamidine cyclo-ligase (InterPro:IPR004733).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G55010 0.5kb upstream 0.5kb upstream 2764   true Chr3: 20386097-20388860
AT3G55010 0.5kb upstream 0.5kb upstream 500   false Chr3: 20386097-20386596
AT3G55010 0.5kb downstream 0.5kb downstream 2764   true Chr3: 20386597-20389360
AT3G55010 0.5kb downstream 0.5kb downstream 500   false Chr3: 20388861-20389360
AT3G55010 1.0kb upstream 1.0kb upstream 3264   true Chr3: 20385597-20388860
AT3G55010 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20385597-20386596
AT3G55010 1.0kb downstream 1.0kb downstream 3264   true Chr3: 20386597-20389860
AT3G55010 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20388861-20389860
AT3G55010 3.0kb upstream 3.0kb upstream 5264   true Chr3: 20383597-20388860
AT3G55010 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20383597-20386596
AT3G55010 3.0kb downstream 3.0kb downstream 5264   true Chr3: 20386597-20391860
AT3G55010 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20388861-20391860


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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00230 Purine metabolism

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139