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Gene : AT3G56120 A. thaliana

Gene ID  ? AT3G56120
Brief Description  S-adenosyl-L-methionine-dependent methyltransferases superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Met10 (InterPro:IPR003402); BEST Arabidopsis thaliana protein match is: Met-10 like family protein (TAIR:AT4G27340.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G56120 0.5kb upstream 0.5kb upstream 3898   true Chr3: 20822646-20826543
AT3G56120 0.5kb upstream 0.5kb upstream 500   false Chr3: 20822646-20823145
AT3G56120 0.5kb downstream 0.5kb downstream 3898   true Chr3: 20823146-20827043
AT3G56120 0.5kb downstream 0.5kb downstream 500   false Chr3: 20826544-20827043
AT3G56120 1.0kb upstream 1.0kb upstream 4398   true Chr3: 20822146-20826543
AT3G56120 1.0kb upstream 1.0kb upstream 1000   false Chr3: 20822146-20823145
AT3G56120 1.0kb downstream 1.0kb downstream 4398   true Chr3: 20823146-20827543
AT3G56120 1.0kb downstream 1.0kb downstream 1000   false Chr3: 20826544-20827543
AT3G56120 3.0kb upstream 3.0kb upstream 6398   true Chr3: 20820146-20826543
AT3G56120 3.0kb upstream 3.0kb upstream 3000   false Chr3: 20820146-20823145
AT3G56120 3.0kb downstream 3.0kb downstream 6398   true Chr3: 20823146-20829543
AT3G56120 3.0kb downstream 3.0kb downstream 3000   false Chr3: 20826544-20829543

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0