help  | faq  | software  | ARAPORT

Gene : AGL16 A. thaliana

Gene ID  ? AT3G57230
Brief Description  AGAMOUS-like 16  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.  Source: TAIR, Jun 30, 2015.
Name  ? AGAMOUS-like 16

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G57230 0.5kb upstream 0.5kb upstream 4245   true Chr3: 21176782-21181026
AT3G57230 0.5kb upstream 0.5kb upstream 500   false Chr3: 21176782-21177281
AT3G57230 0.5kb downstream 0.5kb downstream 4245   true Chr3: 21177282-21181526
AT3G57230 0.5kb downstream 0.5kb downstream 500   false Chr3: 21181027-21181526
AT3G57230 1.0kb upstream 1.0kb upstream 4745   true Chr3: 21176282-21181026
AT3G57230 1.0kb upstream 1.0kb upstream 1000   false Chr3: 21176282-21177281
AT3G57230 1.0kb downstream 1.0kb downstream 4745   true Chr3: 21177282-21182026
AT3G57230 1.0kb downstream 1.0kb downstream 1000   false Chr3: 21181027-21182026
AT3G57230 3.0kb upstream 3.0kb upstream 6745   true Chr3: 21174282-21181026
AT3G57230 3.0kb upstream 3.0kb upstream 3000   false Chr3: 21174282-21177281
AT3G57230 3.0kb downstream 3.0kb downstream 6745   true Chr3: 21177282-21184026
AT3G57230 3.0kb downstream 3.0kb downstream 3000   false Chr3: 21181027-21184026


Protein Displayer


Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression


Save / Export






Cytoscape Network Displayer


Homologue Displayer

Phytomine Ortholog Displayer


Alelle Table Displayer

Stock Gene Table Displayer



10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139