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Gene : AGL16 A. thaliana

Gene ID  ? AT3G57230
Brief Description  AGAMOUS-like 16  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AGAMOUS-like 16 (AGL16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.  Source: TAIR, Jun 30, 2015.
Name  ? AGAMOUS-like 16

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G57230 0.5kb upstream 0.5kb upstream 4245   true Chr3: 21176782-21181026
AT3G57230 0.5kb upstream 0.5kb upstream 500   false Chr3: 21176782-21177281
AT3G57230 0.5kb downstream 0.5kb downstream 4245   true Chr3: 21177282-21181526
AT3G57230 0.5kb downstream 0.5kb downstream 500   false Chr3: 21181027-21181526
AT3G57230 1.0kb upstream 1.0kb upstream 4745   true Chr3: 21176282-21181026
AT3G57230 1.0kb upstream 1.0kb upstream 1000   false Chr3: 21176282-21177281
AT3G57230 1.0kb downstream 1.0kb downstream 4745   true Chr3: 21177282-21182026
AT3G57230 1.0kb downstream 1.0kb downstream 1000   false Chr3: 21181027-21182026
AT3G57230 3.0kb upstream 3.0kb upstream 6745   true Chr3: 21174282-21181026
AT3G57230 3.0kb upstream 3.0kb upstream 3000   false Chr3: 21174282-21177281
AT3G57230 3.0kb downstream 3.0kb downstream 6745   true Chr3: 21177282-21184026
AT3G57230 3.0kb downstream 3.0kb downstream 3000   false Chr3: 21181027-21184026

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Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139