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Gene : DAG1 A. thaliana

Gene ID  ? AT3G61850
Brief Description  Dof-type zinc finger DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Zinc finger transcription factor of the Dof family involved in the control of seed germination.  Source: TAIR, Jun 30, 2015.
Name  ? dof affecting germination 1

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5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data show that AtGA3ox1 is directly regulated by DAG1, and suggest that DAG1 is not a direct regulatory target of PIL5. 19874540
ELIP (EARLY LIGHT-INDUCED PROTEIN) genes of Arabidopsis are involved in seed germination and that they act downstream of the Dof protein DAG1, although they are not its direct regulatory targets. 21299564
DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene 24719470
GAI interacts with DAG1 in embryo development. 25064446
DAG2 is a positive regulator of the light-mediated seed germination process, and particularly reveal that this protein plays its main role downstream of PIL5 and DAG1 in the phytochrome B (phyB)-mediated pathway. 25850831

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G61850 0.5kb upstream 0.5kb upstream 2965   true Chr3: 22894768-22897732
AT3G61850 0.5kb upstream 0.5kb upstream 500   false Chr3: 22894768-22895267
AT3G61850 0.5kb downstream 0.5kb downstream 2965   true Chr3: 22895268-22898232
AT3G61850 0.5kb downstream 0.5kb downstream 500   false Chr3: 22897733-22898232
AT3G61850 1.0kb upstream 1.0kb upstream 3465   true Chr3: 22894268-22897732
AT3G61850 1.0kb upstream 1.0kb upstream 1000   false Chr3: 22894268-22895267
AT3G61850 1.0kb downstream 1.0kb downstream 3465   true Chr3: 22895268-22898732
AT3G61850 1.0kb downstream 1.0kb downstream 1000   false Chr3: 22897733-22898732
AT3G61850 3.0kb upstream 3.0kb upstream 5465   true Chr3: 22892268-22897732
AT3G61850 3.0kb upstream 3.0kb upstream 3000   false Chr3: 22892268-22895267
AT3G61850 3.0kb downstream 3.0kb downstream 5465   true Chr3: 22895268-22900732
AT3G61850 3.0kb downstream 3.0kb downstream 3000   false Chr3: 22897733-22900732

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016