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Gene : AT3G62930 A. thaliana

Gene ID  ? AT3G62930
Brief Description  Thioredoxin superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G03020.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT3G62930 0.5kb upstream 0.5kb upstream 986   true Chr3: 23261442-23262427
AT3G62930 0.5kb upstream 0.5kb upstream 500   false Chr3: 23261928-23262427
AT3G62930 0.5kb downstream 0.5kb downstream 986   true Chr3: 23260942-23261927
AT3G62930 0.5kb downstream 0.5kb downstream 500   false Chr3: 23260942-23261441
AT3G62930 1.0kb upstream 1.0kb upstream 1486   true Chr3: 23261442-23262927
AT3G62930 1.0kb upstream 1.0kb upstream 1000   false Chr3: 23261928-23262927
AT3G62930 1.0kb downstream 1.0kb downstream 1486   true Chr3: 23260442-23261927
AT3G62930 1.0kb downstream 1.0kb downstream 1000   false Chr3: 23260442-23261441
AT3G62930 3.0kb upstream 3.0kb upstream 3486   true Chr3: 23261442-23264927
AT3G62930 3.0kb upstream 3.0kb upstream 3000   false Chr3: 23261928-23264927
AT3G62930 3.0kb downstream 3.0kb downstream 3486   true Chr3: 23258442-23261927
AT3G62930 3.0kb downstream 3.0kb downstream 3000   false Chr3: 23258442-23261441

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139