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Gene : RLK4 A. thaliana

Gene ID  ? AT4G00340
Brief Description  receptor-like protein kinase 4  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? receptor-like protein kinase 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a receptor-like protein kinase that is expressed in roots.  Source: TAIR, Jun 30, 2015.
Name  ? receptor-like protein kinase 4

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G00340 0.5kb upstream 0.5kb upstream 3628   true Chr4: 148112-151739
AT4G00340 0.5kb upstream 0.5kb upstream 500   false Chr4: 148112-148611
AT4G00340 0.5kb downstream 0.5kb downstream 3628   true Chr4: 148612-152239
AT4G00340 0.5kb downstream 0.5kb downstream 500   false Chr4: 151740-152239
AT4G00340 1.0kb upstream 1.0kb upstream 4128   true Chr4: 147612-151739
AT4G00340 1.0kb upstream 1.0kb upstream 1000   false Chr4: 147612-148611
AT4G00340 1.0kb downstream 1.0kb downstream 4128   true Chr4: 148612-152739
AT4G00340 1.0kb downstream 1.0kb downstream 1000   false Chr4: 151740-152739
AT4G00340 3.0kb upstream 3.0kb upstream 6128   true Chr4: 145612-151739
AT4G00340 3.0kb upstream 3.0kb upstream 3000   false Chr4: 145612-148611
AT4G00340 3.0kb downstream 3.0kb downstream 6128   true Chr4: 148612-154739
AT4G00340 3.0kb downstream 3.0kb downstream 3000   false Chr4: 151740-154739

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139