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Gene : AT4G00600 A. thaliana

Gene ID  ? AT4G00600
Brief Description  Amino acid dehydrogenase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00620.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G00600 0.5kb upstream 0.5kb upstream 1791   true Chr4: 255320-257110
AT4G00600 0.5kb upstream 0.5kb upstream 500   false Chr4: 256611-257110
AT4G00600 0.5kb downstream 0.5kb downstream 1791   true Chr4: 254820-256610
AT4G00600 0.5kb downstream 0.5kb downstream 500   false Chr4: 254820-255319
AT4G00600 1.0kb upstream 1.0kb upstream 2291   true Chr4: 255320-257610
AT4G00600 1.0kb upstream 1.0kb upstream 1000   false Chr4: 256611-257610
AT4G00600 1.0kb downstream 1.0kb downstream 2291   true Chr4: 254320-256610
AT4G00600 1.0kb downstream 1.0kb downstream 1000   false Chr4: 254320-255319
AT4G00600 3.0kb upstream 3.0kb upstream 4291   true Chr4: 255320-259610
AT4G00600 3.0kb upstream 3.0kb upstream 3000   false Chr4: 256611-259610
AT4G00600 3.0kb downstream 3.0kb downstream 4291   true Chr4: 252320-256610
AT4G00600 3.0kb downstream 3.0kb downstream 3000   false Chr4: 252320-255319

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0