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Gene : SK32 A. thaliana

Gene ID  ? AT4G00720
Brief Description  shaggy-like protein kinase 32  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? shaggy-like protein kinase 32 (SK32); FUNCTIONS IN: kinase activity; INVOLVED IN: response to brassinosteroid stimulus; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: shaggy-like kinase 13 (TAIR:AT5G14640.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes ASKtheta, a group III Arabidopsis GSK3/shaggy-like kinase. Functions in the brassinosteroid signalling pathway.  Source: TAIR, Jun 30, 2015.
Name  ? shaggy-like protein kinase 32
  • synonyms:
  • ASKTHETA,
  • ATSK32,
  • SHAGGY-LIKE PROTEIN KINASE THETA,
  • shaggy-like protein kinase 32

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtSK3-2 plays an important role in the control of cell elongation in flower development. [AtSK3-2] [ATSK32] 17427040
ASKtheta is a novel component of the brassinosteroid signalling cascade, targeting the transcription factors BES1, BZR1 and BEH2. [ASKtheta] 20128883

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G00720 0.5kb upstream 0.5kb upstream 4392   true Chr4: 293588-297979
AT4G00720 0.5kb upstream 0.5kb upstream 500   false Chr4: 297480-297979
AT4G00720 0.5kb downstream 0.5kb downstream 4392   true Chr4: 293088-297479
AT4G00720 0.5kb downstream 0.5kb downstream 500   false Chr4: 293088-293587
AT4G00720 1.0kb upstream 1.0kb upstream 4892   true Chr4: 293588-298479
AT4G00720 1.0kb upstream 1.0kb upstream 1000   false Chr4: 297480-298479
AT4G00720 1.0kb downstream 1.0kb downstream 4892   true Chr4: 292588-297479
AT4G00720 1.0kb downstream 1.0kb downstream 1000   false Chr4: 292588-293587
AT4G00720 3.0kb upstream 3.0kb upstream 6892   true Chr4: 293588-300479
AT4G00720 3.0kb upstream 3.0kb upstream 3000   false Chr4: 297480-300479
AT4G00720 3.0kb downstream 3.0kb downstream 6892   true Chr4: 290588-297479
AT4G00720 3.0kb downstream 3.0kb downstream 3000   false Chr4: 290588-293587

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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139