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Gene : AT4G00840 A. thaliana

Gene ID  ? AT4G00840
Brief Description  DHHC-type zinc finger family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G00840 0.5kb upstream 0.5kb upstream 2586   true Chr4: 355211-357796
AT4G00840 0.5kb upstream 0.5kb upstream 500   false Chr4: 357297-357796
AT4G00840 0.5kb downstream 0.5kb downstream 2586   true Chr4: 354711-357296
AT4G00840 0.5kb downstream 0.5kb downstream 500   false Chr4: 354711-355210
AT4G00840 1.0kb upstream 1.0kb upstream 3086   true Chr4: 355211-358296
AT4G00840 1.0kb upstream 1.0kb upstream 1000   false Chr4: 357297-358296
AT4G00840 1.0kb downstream 1.0kb downstream 3086   true Chr4: 354211-357296
AT4G00840 1.0kb downstream 1.0kb downstream 1000   false Chr4: 354211-355210
AT4G00840 3.0kb upstream 3.0kb upstream 5086   true Chr4: 355211-360296
AT4G00840 3.0kb upstream 3.0kb upstream 3000   false Chr4: 357297-360296
AT4G00840 3.0kb downstream 3.0kb downstream 5086   true Chr4: 352211-357296
AT4G00840 3.0kb downstream 3.0kb downstream 3000   false Chr4: 352211-355210

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0