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Gene : WRKY22 A. thaliana

Gene ID  ? AT4G01250
Brief Description  WRKY family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? WRKY22; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23550.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? AtWRKY22 is a member of WRKY Transcription Factor; Group II-e. It is involved in regulation of dark induced leaf senescence.  Source: TAIR, Jun 30, 2015.

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtWRKY22 participates in the dark-induced senescence signal transduction pathway 21359674
Data indicate that WRKY22 T-DNA insertion mutants wrky22-1 and wrky22-2 had lower disease resistance and lower induction of innate immunity markers, such as FLG22-INDUCED RECEPTOR-LIKE KINASE1 (FRK1) and WRKY53, after submergence. 23897923

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G01250 0.5kb upstream 0.5kb upstream 2220   true Chr4: 522530-524749
AT4G01250 0.5kb upstream 0.5kb upstream 500   false Chr4: 524250-524749
AT4G01250 0.5kb downstream 0.5kb downstream 2220   true Chr4: 522030-524249
AT4G01250 0.5kb downstream 0.5kb downstream 500   false Chr4: 522030-522529
AT4G01250 1.0kb upstream 1.0kb upstream 2720   true Chr4: 522530-525249
AT4G01250 1.0kb upstream 1.0kb upstream 1000   false Chr4: 524250-525249
AT4G01250 1.0kb downstream 1.0kb downstream 2720   true Chr4: 521530-524249
AT4G01250 1.0kb downstream 1.0kb downstream 1000   false Chr4: 521530-522529
AT4G01250 3.0kb upstream 3.0kb upstream 4720   true Chr4: 522530-527249
AT4G01250 3.0kb upstream 3.0kb upstream 3000   false Chr4: 524250-527249
AT4G01250 3.0kb downstream 3.0kb downstream 4720   true Chr4: 519530-524249
AT4G01250 3.0kb downstream 3.0kb downstream 3000   false Chr4: 519530-522529

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04626 Plant-pathogen interaction

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Expression

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Interactions

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016