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Gene : AT4G01590 A. thaliana

Gene ID  ? AT4G01590
Brief Description  DNA-directed RNA polymerase III subunit  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G01590 0.5kb upstream 0.5kb upstream 2148   true Chr4: 688813-690960
AT4G01590 0.5kb upstream 0.5kb upstream 500   false Chr4: 690461-690960
AT4G01590 0.5kb downstream 0.5kb downstream 2148   true Chr4: 688313-690460
AT4G01590 0.5kb downstream 0.5kb downstream 500   false Chr4: 688313-688812
AT4G01590 1.0kb upstream 1.0kb upstream 2648   true Chr4: 688813-691460
AT4G01590 1.0kb upstream 1.0kb upstream 1000   false Chr4: 690461-691460
AT4G01590 1.0kb downstream 1.0kb downstream 2648   true Chr4: 687813-690460
AT4G01590 1.0kb downstream 1.0kb downstream 1000   false Chr4: 687813-688812
AT4G01590 3.0kb upstream 3.0kb upstream 4648   true Chr4: 688813-693460
AT4G01590 3.0kb upstream 3.0kb upstream 3000   false Chr4: 690461-693460
AT4G01590 3.0kb downstream 3.0kb downstream 4648   true Chr4: 685813-690460
AT4G01590 3.0kb downstream 3.0kb downstream 3000   false Chr4: 685813-688812

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00240 Pyrimidine metabolism
00230 Purine metabolism
03020 RNA polymerase

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Expression

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0