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Gene : RSH1 A. thaliana

Gene ID  ? AT4G02260
Brief Description  RELA/SPOT homolog 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1).  Source: TAIR, Jun 30, 2015.
Name  ? RELA/SPOT homolog 1
  • synonyms:
  • RELA/SPOT HOMOLOG 1,
  • RELA-SPOT HOMOLOG 1,
  • ATRSH1,
  • AT-RSH1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G02260 0.5kb upstream 0.5kb upstream 6884   true Chr4: 984623-991506
AT4G02260 0.5kb upstream 0.5kb upstream 500   false Chr4: 984623-985122
AT4G02260 0.5kb downstream 0.5kb downstream 6884   true Chr4: 985123-992006
AT4G02260 0.5kb downstream 0.5kb downstream 500   false Chr4: 991507-992006
AT4G02260 1.0kb upstream 1.0kb upstream 7384   true Chr4: 984123-991506
AT4G02260 1.0kb upstream 1.0kb upstream 1000   false Chr4: 984123-985122
AT4G02260 1.0kb downstream 1.0kb downstream 7384   true Chr4: 985123-992506
AT4G02260 1.0kb downstream 1.0kb downstream 1000   false Chr4: 991507-992506
AT4G02260 3.0kb upstream 3.0kb upstream 9384   true Chr4: 982123-991506
AT4G02260 3.0kb upstream 3.0kb upstream 3000   false Chr4: 982123-985122
AT4G02260 3.0kb downstream 3.0kb downstream 9384   true Chr4: 985123-994506
AT4G02260 3.0kb downstream 3.0kb downstream 3000   false Chr4: 991507-994506

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139