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Gene : AT4G02450 A. thaliana

Gene ID  ? AT4G02450
Brief Description  HSP20-like chaperones superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? HSP20-like chaperones superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT3G03773.1).  Source: TAIR, Jun 30, 2015.

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The Arabidopsis co-chaperone protein p23 is a CK2 target.[p23-1] 21735091
The functional characterization of the two isoforms of p23 in Arabidopsis thaliana is reported, suggesting a key role of p23 in the regulation of root development. Arabidopsis p23 mutants show a short root length phenotype with a reduced meristem length. 26163704

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G02450 0.5kb upstream 0.5kb upstream 2678   true Chr4: 1073753-1076430
AT4G02450 0.5kb upstream 0.5kb upstream 500   false Chr4: 1075931-1076430
AT4G02450 0.5kb downstream 0.5kb downstream 2678   true Chr4: 1073253-1075930
AT4G02450 0.5kb downstream 0.5kb downstream 500   false Chr4: 1073253-1073752
AT4G02450 1.0kb upstream 1.0kb upstream 3178   true Chr4: 1073753-1076930
AT4G02450 1.0kb upstream 1.0kb upstream 1000   false Chr4: 1075931-1076930
AT4G02450 1.0kb downstream 1.0kb downstream 3178   true Chr4: 1072753-1075930
AT4G02450 1.0kb downstream 1.0kb downstream 1000   false Chr4: 1072753-1073752
AT4G02450 3.0kb upstream 3.0kb upstream 5178   true Chr4: 1073753-1078930
AT4G02450 3.0kb upstream 3.0kb upstream 3000   false Chr4: 1075931-1078930
AT4G02450 3.0kb downstream 3.0kb downstream 5178   true Chr4: 1070753-1075930
AT4G02450 3.0kb downstream 3.0kb downstream 3000   false Chr4: 1070753-1073752

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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Homology

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139