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Gene : RBP-DR1 A. thaliana

Gene ID  ? AT4G03110
Brief Description  RNA-binding protein-defense related 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA-binding protein-defense related 1 (RBP-DR1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: plant-type hypersensitive response, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G03457.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.  Source: TAIR, Jun 30, 2015.
Name  ? RNA-binding protein-defense related 1
  • synonyms:
  • AtRBP-DR1,
  • Bruno-like 1,
  • AtBRN1,
  • BRN1,
  • RNA-binding protein-defense related 1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtRBP-DR1 is a positive regulator of salicyclic acid (SA)-mediated immunity, possibly acting on SA signaling-related genes at a post-transcriptional level. 20636102
At4g03110 and At1g03457 proteins modulate flowering time via 3' UTR-dependent decay of SOC1 mRNA. 23437850

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT4G03110 0.5kb upstream 0.5kb upstream 3942   true Chr4: 1376306-1380247
AT4G03110 0.5kb upstream 0.5kb upstream 500   false Chr4: 1379748-1380247
AT4G03110 0.5kb downstream 0.5kb downstream 3942   true Chr4: 1375806-1379747
AT4G03110 0.5kb downstream 0.5kb downstream 500   false Chr4: 1375806-1376305
AT4G03110 1.0kb upstream 1.0kb upstream 4442   true Chr4: 1376306-1380747
AT4G03110 1.0kb upstream 1.0kb upstream 1000   false Chr4: 1379748-1380747
AT4G03110 1.0kb downstream 1.0kb downstream 4442   true Chr4: 1375306-1379747
AT4G03110 1.0kb downstream 1.0kb downstream 1000   false Chr4: 1375306-1376305
AT4G03110 3.0kb upstream 3.0kb upstream 6442   true Chr4: 1376306-1382747
AT4G03110 3.0kb upstream 3.0kb upstream 3000   false Chr4: 1379748-1382747
AT4G03110 3.0kb downstream 3.0kb downstream 6442   true Chr4: 1373306-1379747
AT4G03110 3.0kb downstream 3.0kb downstream 3000   false Chr4: 1373306-1376305

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016